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Update Metromap with May 2025 hackathon#46

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olgabot/update-metromap-hack-may-2025-v2
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Update Metromap with May 2025 hackathon#46
olgabot wants to merge 2 commits into
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olgabot/update-metromap-hack-may-2025-v2

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@olgabot

@olgabot olgabot commented May 14, 2025

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  • Add test config from Sarek with @maxulysse's help
  • Add updated metromap

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/proteinannotator branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@github-actions

github-actions Bot commented May 14, 2025 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit fc81bc4

+| ✅ 185 tests passed       |+
#| ❔   3 tests were ignored |#
!| ❗   3 tests had warnings |!
Details

❗ Test warnings:

  • files_exist - File not found: conf/igenomes.config
  • files_exist - File not found: conf/igenomes_ignored.config
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/nf-core-proteinannotator_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-proteinannotator_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-proteinannotator_logo_dark.png

✅ Tests passed:

Run details

  • nf-core/tools version 3.2.1
  • Run at 2025-05-14 18:33:27

@olgabot

olgabot commented May 14, 2025

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Closing in favor of #47 because this has nf-test stuff

@olgabot olgabot closed this May 14, 2025
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